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基于SNP遗传图谱定位甘蓝型油菜氮肥高效吸收相关性状的QTLs

Mapping QTLs Associated with Nitrogen Uptake Efficiency Traits in Rapeseed Based on SNP Genetic Map

  • 摘要: 选用氮肥吸收效率存在显著差异的甘蓝型油菜品种湘油15号(高氮肥吸收效率)和R210(低氮肥吸收效率)杂交获得F1,通过小孢子培养获得含180份株系的DH群体。对两个施氮肥水平下与油菜氮肥吸收效率密切相关的茎基粗、单株角果数、单株地上部干物质量及氮肥吸收效率进行表型调查和QTL分析。结果表明,构建的高密度遗传图谱覆盖甘蓝型油菜19条染色体,包含42751个多态性SNP标记,4302个簇(bin),覆盖基因组长度为2959.89 cM,相邻簇之间平均距离为0.69 cM。采用复合区间作图法(CIM)在两个施氮水平下共检测到14个QTLs,单个QTL可解释的表型变异为5.24%~18.22%。筛选到7个可能与油菜氮肥高效吸收相关性状的候选基因和1个类似于叶绿体的含有核苷三磷酸水解酶的p环超家族蛋白。此QTLs和候选基因将为油菜氮高效吸收的遗传改良提供有用的信息。

     

    Abstract: This study utilized two distinct rapeseed varieties, Xiangyou 15 with high nitrogen fertilizer absorption efficiency and R210 with low nitrogen fertilizer absorption efficiency, to produce an F1 hybrid. A doubled haploid(DH) population comprising 180 lines was obtained through microspore culture. Phenotypic investigation and QTL analysis were conducted on traits closely related to nitrogen fertilizer absorption efficiency in rapeseed under two nitrogen fertilization levels, including basal stem diameter, effective pod number per plant, aboveground dry weight per plant, and nitrogen absorption efficiency. The results showed that a high-density genetic map was constructed, covering 19 chromosomes of rapeseed, comprising 42751 polymorphic SNP markers, 4302 bins, with a genome coverage of 2959.89 cM and an average interval of 0.69 cM between adjacent bins. Based on this map, using the composite interval mapping method(CIM), 14 QTLs were detected under two nitrogen application levels, with individual QTL explaining 5.24% to 18.22% of the phenotypic variation. Seven candidate genes and one p-loop containing nucleoside triphosphate hydrolases superfamily protein of chloroplastic-like potentially associated with nitrogen use efficiency traits in rapeseed were identified. These QTLs and candidate genes will provide valuable information for the genetic improvement of nitrogen use efficiency in rapeseed.